Published in ArXiv Preprints, 2020
Recommended citation: M. Pourreza Shahri, A. Tahmasebi, B. Ye, H. Zhu, J. Aslam, T. Ferris, An Ensemble Approach for Automatic Structuring of Radiology Reports, ArXiv, 2020. Link to paper
Published in BioRxiv Preprints, 2020
Recommended citation: M. Pourreza Shahri, K. Lyon, J. Schearer, and I. Kahanda, DeepPPPred: An Ensemble of BERT, CNN, and RNN for Classifying Co-mentions of Proteins and Phenotypes, BioRxiv, 2020. Link to paper
Published in ISMB 2020, 2020
Recommended citation: M. Pourreza Shahri and I. Kahanda, Deep Semi-supervised Ensemble Method for Classifying Co-mentions of Human Proteins and Phenotypes", Intelligent Systems for Molecular Biology (ISMB), 2020." Link to paper
Published in 2020 IEEE 14th International Conference on Semantic Computing (ICSC), 2020
Recommended citation: M. Pourreza Shahri and I. Kahanda, ProPheno 1.0: An online dataset for accelerating the complete characterization of the human protein-phenotype landscape in biomedical literature", 14th IEEE International Conference on Semantic Computing, 2020." Link to paper
Published in Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, 2019
Recommended citation: M. Pourreza Shahri, G. Reynolds, M. M. Roe, and I. Kahanda, PPPred: Classifying Protein-phenotype Co-mentions Extracted from Biomedical Literature", Proceedings of the 10th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB), Niagara Falls, NY, USA, 2019." Link to paper
Published in 2019 IEEE International Conference On Artificial Intelligence Testing (AITest), 2019
Recommended citation: M. Pourreza Shahri, M. Srinivasan, G. Reynolds, D. Bimczok, I. Kahanda, and U. Kanewala, Metamorphic Testing for Quality Assurance of Protein Function Prediction Tools", The IEEE International Conference on Artificial Intelligence Testing, San Francisco, CA, USA, 2019." Link to paper
Published in Proceedings of the 3rd International Workshop on Metamorphic Testing, 2018
Recommended citation: M. Srinivasan, M. Pourreza Shahri, U. Kanewala, and I. Kahanda, Quality Assurance of Bioinformatics Software: A Case Study of Testing a Biomedical Text Processing Tool Using Metamorphic Testing", Proceedings of the 3rd International Workshop on Metamorphic Testing, ACM, Gothenburg, Sweden, 2018." Link to paper
Published in 10th International Conference on Bioinformatics and Computational Biology (BiCoB) 2018, 2018
Recommended citation: M. Pourreza Shahri and I. Kahanda, Extracting Co-mention Features from Biomedical Literature for Automated Protein Phenotype Prediction using PHENOstruct", 10th International Conference on Bioinformatics and Computational Biology (BiCOB), Las Vegas, NV, USA, 2018." Link to paper
Published in 24th IEEE International Conference on Electrical Engineering (ICEE), 2016
Recommended citation: M. Pourreza Shahri, M. Kahani, and H. Ekbia, Providing FAQ lists based on ontology", 24th IEEE Iranian Conference on Electrical Engineering (ICEE), Shiraz, Iran, 2016" Link to paper